#MicrobialEvolution

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PLOS Biology<a href="https://fediscience.org/tags/Phages" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#Phages</a> are key drivers of <a href="https://fediscience.org/tags/MicrobialEvolution" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#MicrobialEvolution</a>, but many <a href="https://fediscience.org/tags/phage" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#phage</a> genes are poorly understood. @denish_piya @AdamArkinLab <a href="https://fediscience.org/@vivek_mutalik" class="u-url mention" rel="nofollow noopener noreferrer" target="_blank">@vivek_mutalik</a> &co use arrayed genome-wide <a href="https://fediscience.org/tags/CRISPRi" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#CRISPRi</a> to map gene the essentiality landscape in the iconic coliphages λ & P1. <a href="https://fediscience.org/tags/PLOSBiology" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#PLOSBiology</a> <a href="https://plos.io/3uLtzgU" rel="nofollow noopener noreferrer" target="_blank">https://plos.io/3uLtzgU</a>

Mike BlazaninASM is now taking session proposals for the 2024 Microbe meeting in Atlanta, Georgia<a href="https://ecoevo.social/tags/ASM" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#ASM</a> <a href="https://ecoevo.social/tags/Microbiology" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#Microbiology</a> <a href="https://ecoevo.social/tags/MicrobialEvolution" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#MicrobialEvolution</a> <a href="https://ecoevo.social/tags/MicrobialEcology" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#MicrobialEcology</a> <a href="https://ecoevo.social/tags/Phage" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#Phage</a> <a href="https://ecoevo.social/tags/Phages" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#Phages</a> <a href="https://ecoevo.social/tags/Bacteria" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#Bacteria</a><a href="https://asm.org/Events/ASM-Microbe/Session-Proposals?_zs=eKArl&_zl=bePd2" rel="nofollow noopener noreferrer" target="_blank">https://asm.org/Events/ASM-Microbe/Session-Proposals?_zs=eKArl&_zl=bePd2</a>

Mike BlazaninHappy to see the first experimental project I led finally out in the world! With Jeremy Moore, Sydney Olsen, and Mike TravisanoWe combined experimental evolution and mathematical modeling to ask: do bacteria evolve to swim away from phages? 1/n<a href="https://doi.org/10.1101/2023.04.29.538831" rel="nofollow noopener noreferrer" target="_blank">https://doi.org/10.1101/2023.04.29.538831</a><a href="https://ecoevo.social/tags/microbiology" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#microbiology</a> <a href="https://ecoevo.social/tags/evolution" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#evolution</a> <a href="https://ecoevo.social/tags/ecology" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#ecology</a> <a href="https://ecoevo.social/tags/phages" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#phages</a> <a href="https://ecoevo.social/tags/phage" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#phage</a> <a href="https://ecoevo.social/tags/bacteria" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#bacteria</a> <a href="https://ecoevo.social/tags/MicrobialEvolution" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#MicrobialEvolution</a> <a href="https://ecoevo.social/tags/MicrobialEcology" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#MicrobialEcology</a>

Mike BlazaninI *should* be writing my dissertation...Instead I just released gcplyr v1.3.0 on githubgcplyr is an <a href="https://ecoevo.social/tags/RStats" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#RStats</a> package that makes it easy to wrangle and do model-free analyses of <a href="https://ecoevo.social/tags/microbial" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#microbial</a> growth curve datav1.3.0 includes: - new methods to calculate lag time and doubling time - improved warnings for common situations - improved documentation<a href="https://mikeblazanin.github.io/gcplyr/" rel="nofollow noopener noreferrer" target="_blank">https://mikeblazanin.github.io/gcplyr/</a><a href="https://ecoevo.social/tags/microbiology" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#microbiology</a> <a href="https://ecoevo.social/tags/MicrobialEcology" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#MicrobialEcology</a> <a href="https://ecoevo.social/tags/MicrobialEvolution" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#MicrobialEvolution</a> <a href="https://ecoevo.social/tags/ggplot2" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#ggplot2</a> <a href="https://ecoevo.social/tags/tidyverse" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#tidyverse</a> <a href="https://ecoevo.social/tags/dplyr" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#dplyr</a> <a href="https://ecoevo.social/tags/data" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#data</a>

Jamie Hall🎬 🧫🦠 This amazing time-lapse video shows bacteria-phage coevolution occurring on agar plates over ~6d. Mesmerising visuals, enhanced even more when you read the paper for a glimpse at the underlying evolutionary genetics 😍 <a href="https://mstdn.science/tags/microbiology" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#microbiology</a> <a href="https://mstdn.science/tags/journalclub" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#journalclub</a> <a href="https://mstdn.science/tags/microbialevolution" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#microbialevolution</a> <a href="https://mstdn.science/tags/phage" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#phage</a> <a href="https://www.nature.com/articles/s41467-022-35351-w" rel="nofollow noopener noreferrer" target="_blank">https://www.nature.com/articles/s41467-022-35351-w</a>

Richard LenskiFollow <a href="https://ecoevo.social/@joaoascensao" class="u-url mention" rel="nofollow noopener noreferrer" target="_blank">@joaoascensao</a> <a href="https://mstdn.science/@benjaminhgood" class="u-url mention" rel="nofollow noopener noreferrer" target="_blank">@benjaminhgood</a> for <a href="https://mstdn.science/tags/MicrobialEvolution" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#MicrobialEvolution</a> <a href="https://mstdn.science/tags/Genomics" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#Genomics</a> <a href="https://mstdn.science/tags/Evolution" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#Evolution</a> <a href="https://mstdn.science/tags/ExperimentalEvolution" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#ExperimentalEvolution</a>

Mike BlazaninHey Science Mastodon: can anyone point me towards work on logistic-like growth of a population modeled as one growing subpopulation whose individuals sometimes transition into a nongrowing subpopulation?<a href="https://ecoevo.social/tags/Ecology" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#Ecology</a> <a href="https://ecoevo.social/tags/MathematicalModeling" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#MathematicalModeling</a> <a href="https://ecoevo.social/tags/Modeling" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#Modeling</a> <a href="https://ecoevo.social/tags/Theory" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#Theory</a> <a href="https://ecoevo.social/tags/EcoEvo" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#EcoEvo</a> <a href="https://ecoevo.social/tags/Biology" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#Biology</a> <a href="https://ecoevo.social/tags/Microbiology" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#Microbiology</a> <a href="https://ecoevo.social/tags/MicrobialEcology" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#MicrobialEcology</a> <a href="https://ecoevo.social/tags/MicrobialEvolution" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#MicrobialEvolution</a>

Mike Blazaningcplyr is currently in an Open <a href="https://ecoevo.social/tags/Beta" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#Beta</a> release and under active development, so please DM or email me with any questions, comments, concerns, or bugs you find! I would love to make this tool as useful to the <a href="https://ecoevo.social/tags/microbialecology" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#microbialecology</a> <a href="https://ecoevo.social/tags/microbialevolution" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#microbialevolution</a> <a href="https://ecoevo.social/tags/microbiology" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#microbiology</a> communities as it has been in my own research 10/12

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#MicrobialEvolution