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Molecular Biology & Evolution<p>SatuTe by Manuel et al. is a new tool to quantify phylogenetic signal and saturation between subtrees. Applied to the Tree of Life, SatuTe shows that most ribosomal proteins support a eukaryotic clade.</p><p>🔗 doi.org/10.1093/molbev/msaf090</p><p><a href="https://ecoevo.social/tags/evolbio" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>evolbio</span></a> <a href="https://ecoevo.social/tags/phylogenetics" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>phylogenetics</span></a> <a href="https://ecoevo.social/tags/compbio" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>compbio</span></a></p>
Samuel Lampa<p>We need recipes for common bioinformatics tasks 🧬🧑‍🍳 New post on the blog <a href="https://bionics.it/posts/bioinformatics-recipes" rel="nofollow noopener noreferrer" translate="no" target="_blank"><span class="invisible">https://</span><span class="ellipsis">bionics.it/posts/bioinformatic</span><span class="invisible">s-recipes</span></a> <a href="https://genomic.social/tags/bioinformatics" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>bioinformatics</span></a> <a href="https://genomic.social/tags/compbio" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>compbio</span></a></p>
Thomas Sandmann<p>Today I learned how to store gene expression data in (multiple) parquet files, and query them as a single dataset from R with the {arrow}, {duckdb} or {sparklyr} packages. I am amazed by {duckdb}'s speed 🚀 - even on my laptop! Here's a blog post with what I learned: <a href="https://tomsing1.github.io/blog/posts/parquet/" rel="nofollow noopener noreferrer" target="_blank"><span class="invisible">https://</span><span class="ellipsis">tomsing1.github.io/blog/posts/</span><span class="invisible">parquet/</span></a> <a href="https://genomic.social/tags/TIL" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>TIL</span></a> <a href="https://genomic.social/tags/RStats" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>RStats</span></a> <a href="https://genomic.social/tags/duckdb" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>duckdb</span></a> <a href="https://genomic.social/tags/parquet" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>parquet</span></a> <a href="https://genomic.social/tags/spark" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>spark</span></a> <a href="https://genomic.social/tags/compbio" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>compbio</span></a> <a href="https://genomic.social/tags/rnaseq" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>rnaseq</span></a></p>
Jane Adams<p>PS: They're hiring! If you're a <a href="https://vis.social/tags/computational" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>computational</span></a> <a href="https://vis.social/tags/scientist" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>scientist</span></a> interested in <a href="https://vis.social/tags/biology" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>biology</span></a> <a href="https://vis.social/tags/compbio" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>compbio</span></a> and <a href="https://vis.social/tags/genetics" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>genetics</span></a>, please take a look at open positions like this one for an Associate Computational Scientist ($96,945 - $162,310 DOE):</p><p><a href="https://thejacksonlaboratory.wd1.myworkdayjobs.com/en-US/External_JAX/job/Associate-Computational-Scientist_JR003863" rel="nofollow noopener noreferrer" target="_blank"><span class="invisible">https://</span><span class="ellipsis">thejacksonlaboratory.wd1.mywor</span><span class="invisible">kdayjobs.com/en-US/External_JAX/job/Associate-Computational-Scientist_JR003863</span></a></p><p>They have the coolest data I've ever worked with 🤓</p>
Thomas Sandmann<p>Very cool preprint by Adam P Cribbs's group: "Correcting PCR amplification errors in unique molecular identifiers to generate absolute numbers of sequencing molecules." <a href="https://www.biorxiv.org/content/10.1101/2023.04.06.535911v1" rel="nofollow noopener noreferrer" target="_blank"><span class="invisible">https://www.</span><span class="ellipsis">biorxiv.org/content/10.1101/20</span><span class="invisible">23.04.06.535911v1</span></a> with lots of innovative ideas to a) measure and b) correct PCR induced errors in RNA-seq experiments. <a href="https://genomic.social/tags/rnaseq" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>rnaseq</span></a> <a href="https://genomic.social/tags/ngs" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>ngs</span></a> <a href="https://genomic.social/tags/singlecells" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>singlecells</span></a> <a href="https://genomic.social/tags/compbio" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>compbio</span></a> <a href="https://genomic.social/tags/illumina" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>illumina</span></a> <a href="https://genomic.social/tags/nanopore" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>nanopore</span></a></p>
Joseph Szymborski :qcca:<p>Hi all! I'm Joseph Szymborski, a <a href="https://cosocial.ca/tags/PhD" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>PhD</span></a> student at McGill university studying <a href="https://cosocial.ca/tags/deeplearning" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>deeplearning</span></a> models as applied to molecular biology.</p><p>Specifically, I'm working on predicting the interaction of proteins based solely on their amino acid sequence.</p><p>Follow for upcoming blog posts on topics related to <a href="https://cosocial.ca/tags/bioinformatics" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>bioinformatics</span></a> , molecular biology, and other generally nerdy things.</p><p>Eager to meet and share ideas with <a href="https://cosocial.ca/tags/compbio" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>compbio</span></a> <a href="https://cosocial.ca/tags/netbio" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>netbio</span></a> and <a href="https://cosocial.ca/tags/deeplearning" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>deeplearning</span></a> people here!</p><p><a href="https://cosocial.ca/tags/introductions" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>introductions</span></a> <a href="https://cosocial.ca/tags/ai" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>ai</span></a> <a href="https://cosocial.ca/tags/phdlife" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>phdlife</span></a></p>
Taylor Ferebee<p>Since it’s the new year, I figure an <a href="https://genomic.social/tags/introduction" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>introduction</span></a> is in order. My name is Taylor, and I’m entering my final year as a <a href="https://genomic.social/tags/CompBio" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>CompBio</span></a> PhD candidate at Cornell. <br>My research is primarily focused on using <a href="https://genomic.social/tags/ML" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>ML</span></a> to understand <a href="https://genomic.social/tags/regulation" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>regulation</span></a> of gene expression in grasses. I am particularly interested in <a href="https://genomic.social/tags/representation" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>representation</span></a> and <a href="https://genomic.social/tags/mechanistic" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>mechanistic</span></a> modeling. <br>My other interests include science in the media, supporting Black scientists, and trivia podcasts. <br>I hope to have some great discussions on here! :dna: :rna:</p>
Thomas Sandmann<p>Today I learned how to create an interactive HTML report for gene-set enrichment analysis in R. It allows readers to examine set-level results &amp; drill down into the underlying gene-level statistics interactively. <br><a href="https://tomsing1.github.io/blog/posts/interactive-gene-set-results/" rel="nofollow noopener noreferrer" target="_blank"><span class="invisible">https://</span><span class="ellipsis">tomsing1.github.io/blog/posts/</span><span class="invisible">interactive-gene-set-results/</span></a><br>It's a static HTML page, e.g. no server (<a href="https://genomic.social/tags/shiny" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>shiny</span></a>, <a href="https://genomic.social/tags/dash" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>dash</span></a>, etc) needed. Thanks a lot to the authors of the <a href="https://genomic.social/tags/plotly" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>plotly</span></a> <a href="https://genomic.social/tags/reactable" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>reactable</span></a> <a href="https://genomic.social/tags/crosstalk" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>crosstalk</span></a> and <a href="https://genomic.social/tags/htmlwidget" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>htmlwidget</span></a> tools for making this so easy <a href="https://genomic.social/tags/til" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>til</span></a> <a href="https://genomic.social/tags/rstats" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>rstats</span></a> <a href="https://genomic.social/tags/bioconductor" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>bioconductor</span></a> <a href="https://genomic.social/tags/gsea" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>gsea</span></a> <a href="https://genomic.social/tags/compbio" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>compbio</span></a> <a href="https://genomic.social/tags/visualization" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>visualization</span></a> <span class="h-card"><a href="https://genomic.social/@lianos" class="u-url mention" rel="nofollow noopener noreferrer" target="_blank">@<span>lianos</span></a></span></p>
James Lloyd 🧬<p>New blog post: </p><p>Using the terminal at Warp speed</p><p>AI suggested terminal commands. <a href="https://genomic.social/tags/compbio" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>compbio</span></a> <a href="https://genomic.social/tags/bioinformatics" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>bioinformatics</span></a> <a href="https://genomic.social/tags/genomics" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>genomics</span></a> <a href="https://genomic.social/tags/coding" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>coding</span></a> </p><p><a href="https://www.badgrammargoodsyntax.com/compbio/2022/12/12/compbio-026-using-the-terminal-at-warp-speed" rel="nofollow noopener noreferrer" target="_blank"><span class="invisible">https://www.</span><span class="ellipsis">badgrammargoodsyntax.com/compb</span><span class="invisible">io/2022/12/12/compbio-026-using-the-terminal-at-warp-speed</span></a></p>
Wayne Liang, MD MS FAMIA<p>Biomedical <a href="https://med-mastodon.com/tags/Informatics" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>Informatics</span></a>, <a href="https://med-mastodon.com/tags/AIInMedicine" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>AIInMedicine</span></a>, <a href="https://med-mastodon.com/tags/DigitalHealth" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>DigitalHealth</span></a> folks:</p><p>You are invited to add yourself to the Biomedical &amp; <a href="https://med-mastodon.com/tags/HealthInformatics" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>HealthInformatics</span></a> Social Media Directory maintained by me:<br><a href="https://sites.google.com/view/informaticsdirectory" rel="nofollow noopener noreferrer" target="_blank"><span class="invisible">https://</span><span class="ellipsis">sites.google.com/view/informat</span><span class="invisible">icsdirectory</span></a></p><p>Hopefully this will help us stay connected no matter what platform!</p><p>Please Boost!</p><p><a href="https://med-mastodon.com/tags/TwitterMigration" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>TwitterMigration</span></a> <a href="https://med-mastodon.com/tags/MastadonMigration" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>MastadonMigration</span></a> <a href="https://med-mastodon.com/tags/AMIAInformatics" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>AMIAInformatics</span></a> <a href="https://med-mastodon.com/tags/BiomedicalInformatics" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>BiomedicalInformatics</span></a> <a href="https://med-mastodon.com/tags/DataScience" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>DataScience</span></a> <a href="https://med-mastodon.com/tags/AI" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>AI</span></a> <br><span class="h-card"><a href="https://a.gup.pe/u/healthinformatics" class="u-url mention" rel="nofollow noopener noreferrer" target="_blank">@<span>healthinformatics</span></a></span> <br><span class="h-card"><a href="https://a.gup.pe/u/informatics" class="u-url mention" rel="nofollow noopener noreferrer" target="_blank">@<span>informatics</span></a></span> <br><a href="https://med-mastodon.com/tags/EHR" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>EHR</span></a> <a href="https://med-mastodon.com/tags/bioinformatics" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>bioinformatics</span></a> <a href="https://med-mastodon.com/tags/compbio" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>compbio</span></a> <a href="https://med-mastodon.com/tags/clinicalinformatics" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>clinicalinformatics</span></a> <a href="https://med-mastodon.com/tags/informatician" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>informatician</span></a> <a href="https://med-mastodon.com/tags/informaticist" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>informaticist</span></a></p>
Simon Garnier<p>Join us in Newark! We're hiring a tenure-track assistant professor in comparative biology at NJIT. Perks include a diverse student population and a super supportive department! Hoping to bolster our current strengths spanning neurobiology and ecoevo. </p><p>Details: <a href="https://www.nature.com/naturecareers/job/assistant-professor-comparative-biology-new-jersey-institute-of-technology-njit-764296" rel="nofollow noopener noreferrer" target="_blank"><span class="invisible">https://www.</span><span class="ellipsis">nature.com/naturecareers/job/a</span><span class="invisible">ssistant-professor-comparative-biology-new-jersey-institute-of-technology-njit-764296</span></a> </p><p><span class="h-card"><a href="https://a.gup.pe/u/ecoevojobs" class="u-url mention" rel="nofollow noopener noreferrer" target="_blank">@<span>ecoevojobs</span></a></span> <a href="https://ecoevo.social/tags/AcademicJobs" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>AcademicJobs</span></a> <a href="https://ecoevo.social/tags/ScienceJobs" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>ScienceJobs</span></a> <a href="https://ecoevo.social/tags/JobPosting" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>JobPosting</span></a> <a href="https://ecoevo.social/tags/JobOffer" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>JobOffer</span></a> <a href="https://ecoevo.social/tags/Job" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>Job</span></a> <a href="https://ecoevo.social/tags/Academia" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>Academia</span></a> <a href="https://ecoevo.social/tags/EcoEvo" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>EcoEvo</span></a> <a href="https://ecoevo.social/tags/MolBio" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>MolBio</span></a> <a href="https://ecoevo.social/tags/CompBio" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>CompBio</span></a></p>
Tom Diethe<p>Hi all. First post on here. In case you don’t know me, I’ve been in <a href="https://sigmoid.social/tags/machinelearning" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>machinelearning</span></a> for a while (trained my first <a href="https://sigmoid.social/tags/neural" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>neural</span></a> networks in 1999, but they were rubbish!) now focused on <a href="https://sigmoid.social/tags/compBio" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>compBio</span></a> applications (mainly <a href="https://sigmoid.social/tags/proteinengineering" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>proteinengineering</span></a> ), but also interests in <a href="https://sigmoid.social/tags/bayesian" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>bayesian</span></a> statistics, <a href="https://sigmoid.social/tags/PrivacyEnhancingTechnologies" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>PrivacyEnhancingTechnologies</span></a> and <a href="https://sigmoid.social/tags/continuallearning" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>continuallearning</span></a> . Currently leading a fantastic team of scientists and engineers at Amazon. Slightly sad at the demise of Twitter, hoping <a href="https://sigmoid.social/tags/mastodon" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>mastodon</span></a> can fill the hole it left!</p>
Thomas Sandmann<p><a href="https://genomic.social/tags/Introduction" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>Introduction</span></a> after moving from mastodon.social</p><p>I'm a Computational Biologist at Denali Therapeutics in California's Bay Area. </p><p>My journey includes a Masters in Biochemistry, a PhD in Developmental Biology and high-throughput experiments exploring genetic interactions. </p><p>You can usually find me either collaboratively designing experiments or analyzing genomics data.</p><p>Next, I would love to learn about image analysis.</p><p><a href="https://genomic.social/tags/single" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>single</span></a>-cell <a href="https://genomic.social/tags/biotech" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>biotech</span></a> <a href="https://genomic.social/tags/neurodegeneration" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>neurodegeneration</span></a> <a href="https://genomic.social/tags/compbio" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>compbio</span></a> <a href="https://genomic.social/tags/r" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>r</span></a> <a href="https://genomic.social/tags/python" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>python</span></a> <a href="https://genomic.social/tags/nextflow" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>nextflow</span></a></p>
Jenea Adams<p>As for what I'll use this platform for: I'm still exploring, but hope to expand the conversation on creating <a href="https://genomic.social/tags/inclusive" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>inclusive</span></a> and <a href="https://genomic.social/tags/sustainable" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>sustainable</span></a> frameworks that empower Black women to equitably engage in <a href="https://genomic.social/tags/CompBio" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>CompBio</span></a> across the diaspora. This includes sharing information and creating safe, <a href="https://genomic.social/tags/community" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>community</span></a>-driven spaces for learning and storytelling. </p><p>I'm excited to continue interacting with the <a href="https://genomic.social/tags/CompBio" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>CompBio</span></a> and <a href="https://genomic.social/tags/DataScience" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>DataScience</span></a> scholarship and <a href="https://genomic.social/tags/network" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>network</span></a> with other scientists. </p><p><a href="https://genomic.social/tags/followfriday" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>followfriday</span></a> <a href="https://genomic.social/tags/introduction" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>introduction</span></a> <a href="https://genomic.social/tags/ff" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>ff</span></a> </p><p>/fin</p>
Jenea Adams<p>In January 2022, I created an online <a href="https://genomic.social/tags/networking" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>networking</span></a> platform for Black Women in <a href="https://genomic.social/tags/CompBio" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>CompBio</span></a> to connect, build social capital, and collaborate. <br>Since then, we've grown to over 200 members from 4+ continents, 300+ supporters throughout the CompBio field, and are run by an amazing team of 8 scientists across professional stages. </p><p>We host the#BlackInCompBio series, which gives folx a platform to share their science &amp; journeys through <a href="https://genomic.social/tags/seminars" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>seminars</span></a> or <a href="https://genomic.social/tags/podcast" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>podcast</span></a> interviews. </p><p>www.blackwomencompbio.org</p><p>2/n</p>
Anne Carpenter<p><a href="https://fediscience.org/tags/Introduction" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>Introduction</span></a> Part 1:<br>Hi! I'm a mid-career scientist at the Broad Institute in Cambridge Massachusetts USA and I tend to follow conversations about the career side of science and how to make it a more humane and equitable path. I've been told I have an "overdeveloped" sense of justice/conscientiousness. I have 5 kids; between science and family I've no other hobbies :D<br><a href="https://fediscience.org/tags/BroadInstitute" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>BroadInstitute</span></a> <a href="https://fediscience.org/tags/CompBio" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>CompBio</span></a> <a href="https://fediscience.org/tags/ComputationalBiology" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>ComputationalBiology</span></a> <a href="https://fediscience.org/tags/STEM" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>STEM</span></a> <a href="https://fediscience.org/tags/DEI" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>DEI</span></a> <a href="https://fediscience.org/tags/academia" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>academia</span></a></p>
Sara Gosline<p>My first real day on <a href="https://mas.to/tags/mastadon" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>mastadon</span></a> has been interesting. I forgot how much time I put into finding the diversity that I had on the bird site. I'm still trying to find more folks in <a href="https://mas.to/tags/compbio" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>compbio</span></a> - specifically those who use <a href="https://mas.to/tags/rstats" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>rstats</span></a> or <a href="https://mas.to/tags/networks" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>networks</span></a> in disease, those studying <a href="https://mas.to/tags/cancer" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>cancer</span></a> via <a href="https://mas.to/tags/systemsbiology" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>systemsbiology</span></a> approaches, and anyone looking at <a href="https://mas.to/tags/neurofibromatosis" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>neurofibromatosis</span></a>.</p>
Ana Viñuela<p>Ok, after a couple of days getting used to this, here is my <a href="https://mas.to/tags/introduction" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>introduction</span></a> </p><p>I'm a computational biologist and group leader in Newcastle University (UK) working on the genetics of human age related diseases and the regulation of molecular phenotypes with ageing. </p><p>Some Keywords for searches: <a href="https://mas.to/tags/genetics" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>genetics</span></a> <a href="https://mas.to/tags/QTLs" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>QTLs</span></a> <a href="https://mas.to/tags/eQTLs" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>eQTLs</span></a> <a href="https://mas.to/tags/multiomics" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>multiomics</span></a> <a href="https://mas.to/tags/omics" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>omics</span></a> <a href="https://mas.to/tags/science" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>science</span></a> <a href="https://mas.to/tags/transcriptomics" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>transcriptomics</span></a> <a href="https://mas.to/tags/proteomics" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>proteomics</span></a> <a href="https://mas.to/tags/metabolomics" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>metabolomics</span></a> <a href="https://mas.to/tags/genomics" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>genomics</span></a> <a href="https://mas.to/tags/compbio" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>compbio</span></a> <a href="https://mas.to/tags/diabetes" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>diabetes</span></a> <a href="https://mas.to/tags/NAFLD" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>NAFLD</span></a></p>
Christian Ray<p>By way of <a href="https://social.tchncs.de/tags/introduction" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>introduction</span></a> for the great migration: I am a builder of models: computational (<a href="https://social.tchncs.de/tags/ml" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>ml</span></a>, <a href="https://social.tchncs.de/tags/machinelearning" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>machinelearning</span></a>), mathematical, and scale models (<a href="https://social.tchncs.de/tags/hoscale" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>hoscale</span></a> <a href="https://social.tchncs.de/tags/scalemodel" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>scalemodel</span></a>). Working as a computational biologist / bioinformaticist for ExosomeDx. (<a href="https://social.tchncs.de/tags/multiomics" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>multiomics</span></a> <a href="https://social.tchncs.de/tags/scRNA" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>scRNA</span></a>-seq <a href="https://social.tchncs.de/tags/dimensionality" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>dimensionality</span></a> <a href="https://social.tchncs.de/tags/bioinformatics" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>bioinformatics</span></a> <a href="https://social.tchncs.de/tags/computationalbiology" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>computationalbiology</span></a> <a href="https://social.tchncs.de/tags/compbio" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>compbio</span></a>) Follower of and/or interested in <a href="https://social.tchncs.de/tags/osint" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>osint</span></a>, science history, nuclear power, <a href="https://social.tchncs.de/tags/trains" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>trains</span></a>, pretty birds, canyon hikes, and scientific ethics.</p>
Alice Schwarze<p><a href="https://fediscience.org/tags/introduction" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>introduction</span></a> time!</p><p>I do <a href="https://fediscience.org/tags/appliedmath" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>appliedmath</span></a> at Dartmouth College. I am all about using <a href="https://fediscience.org/tags/math" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>math</span></a> to model <a href="https://fediscience.org/tags/complexsystems" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>complexsystems</span></a> + <a href="https://fediscience.org/tags/networks" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>networks</span></a> in <a href="https://fediscience.org/tags/compbio" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>compbio</span></a>, <a href="https://fediscience.org/tags/compneuro" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>compneuro</span></a> &amp; <a href="https://fediscience.org/tags/compsoc" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>compsoc</span></a>, and to improve methods in <a href="https://fediscience.org/tags/datascience" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>datascience</span></a> and <a href="https://fediscience.org/tags/ml" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>ml</span></a>. (Have worked on <a href="https://fediscience.org/tags/emergence" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>emergence</span></a> of correlation patterns and <a href="https://fediscience.org/tags/causalinference" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>causalinference</span></a> and now getting into <a href="https://fediscience.org/tags/explanaible" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>explanaible</span></a> <a href="https://fediscience.org/tags/machinelearning" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>machinelearning</span></a> for <a href="https://fediscience.org/tags/publichealth" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>publichealth</span></a> / <a href="https://fediscience.org/tags/mentalhealth" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>mentalhealth</span></a>.)</p><p>Would love to connect with the <a href="https://fediscience.org/tags/mastodonscience" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>mastodonscience</span></a> crowd, <a href="https://fediscience.org/tags/womeninmath" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>womeninmath</span></a>, <a href="https://fediscience.org/tags/womeninstem" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>womeninstem</span></a>, <a href="https://fediscience.org/tags/python" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>python</span></a>, <a href="https://fediscience.org/tags/dataviz" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>dataviz</span></a> folks, and fellow <a href="https://fediscience.org/tags/cat" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>cat</span></a> lovers!</p>