Pipeline release! nf-core/methylseq v4.0.0 - Wallace Chrysalis!
Please see the changelog: https://github.com/nf-core/methylseq/releases/tag/4.0.0
Pipeline release! nf-core/methylseq v4.0.0 - Wallace Chrysalis!
Please see the changelog: https://github.com/nf-core/methylseq/releases/tag/4.0.0
New Bioconductor blog post!
Written during #GBCC2025 CoFest, this post highlights recent work to bring Bioconductor tools into Galaxy, featuring training materials, wrapper examples, and ideas for tool developers.
Read more https://blog.bioconductor.org/posts/2025-07-03-bioc-to-galaxy/
Thank you to everyone who made #GBCC2025 such a great week!
From keynotes and technical talks to CoFest projects, it was a brilliant example of cross-community collaboration between Bioconductor and Galaxy
Dealing with a data explosion in #HPC and #LifeSciences? Managing petabytes of data without breaking the bank is a huge challenge.
Our latest blog post explores how Amazon FSx for Lustre Intelligent-Tiering can revolutionize your workflow. Learn how to get self-managing storage that optimizes costs and delivers incredible performance.
Read more here: https://blog.qfotografie.de/2025/06/25/supercharge-your-research-smarter-faster-and-cheaper-data-storage-with-aws-%f0%9f%9a%80/
"Valsci: an open-source, self-hostable literature review utility for automated large-batch scientific claim verification using large language models"
We introduce Valsci, an open-source, self-hostable utility that automates large-batch scientific claim verification using any OpenAI-compatible large language model. Valsci unites RAG with structured bibliometric scoring and chain-of-thought prompting.
https://bmcbioinformatics.biomedcentral.com/articles/10.1186/s12859-025-06159-4
#Bioinformatics
#Genomics
#Academia
A few years ago the PI of my grad lab moved to the NIH. The institute he was at shut down their servers and presumably wiped them. Unfortunately, they had hosted multiple web tools that were lost. The one I built I had the code for. I am going through my digital hoarding to clean out space in my emails. I just randomly came across an email that had zip attachments of the source for TWO LOST TOOLS.
Time to dockerize them.
bioinformatics & climate crisis:
inbox: "The cluster is being shut down. The datacenter's air conditioning is down."
Pipeline release! nf-core/demo v1.0.2 - nf-core/demo 1.0.2 - Mostly Harmless!
Please see the changelog: https://github.com/nf-core/demo/releases/tag/1.0.2
Pipeline release! nf-core/pathogensurveillance v1.0.0 - 1.0.0!
Please see the changelog: https://github.com/nf-core/pathogensurveillance/releases/tag/1.0.0
#HiringAlert
Looking to tackle computational challenges of RNA folding and binding? Come build new RNA algorithms as a #postdoc in my lab!
More info: https://euraxess.ec.europa.eu/jobs/350755
New blog post from the Bioconductor Training Committee!
We’re collaborating with @physaliacourses2 to offer co-branded training in bioinformatics and computational biology.
Read more https://blog.bioconductor.org/posts/2025-06-20-physalia-collaboration/
Par @pierrepo.bsky.social : "Partage et réutilisation des données de simulations de dynamique moléculaire : qu'avons-nous raté ? "
#Bioinformatics #Data #Science #OpenData #OpenScience ça discute aussi modélisation moléculaire, métadonnées et IA !
Pipeline release! nf-core/createtaxdb v1.0.0 - v1.0 - Helpful Hydra - [2025-06-19]!
Please see the changelog: https://github.com/nf-core/createtaxdb/releases/tag/1.0.0
How can AI-powered tools help scientists uncover hidden connections in disease research?
Darling (v2.0): Mining disease-related databases for the detection of biomedical entity associations. Computational and Structural Biotechnology Journal, DOI: https://doi.org/10.1016/j.csbj.2025.06.025
CSBJ: https://www.csbj.org/
Pipeline release! nf-core/metatdenovo v1.2.0 - nf-core/metatdenovo 1.2.0!
Please see the changelog: https://github.com/nf-core/metatdenovo/releases/tag/1.2.0
What's the easiest way to create a GenBank file from FASTA, GFF, BED, etc? All of the ways I know are unnecessarily difficult.
I have always avoided GenBank format, but it's unavoidable sometimes.
Is MEGA-GPT heralding a new age of accessibility in bioinformatics with dedicated chatbots to help guide users? Read more in MBE's new Highlight: "MEGA into the New Generation of Computational Genetics"
doi.org/10.1093/molbev/msaf108
Pipeline release! nf-core/bamtofastq v2.2.0 - 2.2.0 - Kathleen Booth!
Please see the changelog: https://github.com/nf-core/bamtofastq/releases/tag/2.2.0
Curious about your genome?
Join our free webinar on OpenCRAVAT to explore and annotate your own data!
July 10 – 1 PM EDT
Baker & Karchin (JHU)
https://tinyurl.com/3ur6vv35
#Genomics #Bioinformatics #OpenScience
#annotator #opencravat #bioinformatics #opensource #webinar #genomes